LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set common bean-PvCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps PvLG05
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: common bean - PvCookUCDavis2009 [ View Map Set Info ]
Map Name: PvLG05
Map Start: 0 cM
Map Stop: 62.2 cM
Features by Type:
53 SNP
53 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 53.       of 3 | Next
common bean - PvCookUCDavis2009 - PvLG05
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Pv_TOG896372 SNP 62.2 soybean - GmJGI8x - Gm13 TOG896372 TOG 30,386,140 - 30,392,625 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG896372_154 SNP 74.2 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP48 SNP 38.506 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG900991 SNP 61.4 pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG900991_249 SNP 74.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG900991 TOG 44,141,044 - 44,144,239 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG900991 TOG 8,464,923 - 8,468,783 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG896530 SNP 56.5 soybean - GmJGI8x - Gm13 TOG896530 TOG 29,342,357 - 29,343,881 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG896530 TOG 42,400,970 - 42,408,218 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A01 SNP52 SNP 75.854 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG896530 TOG 9,624,718 - 9,638,018 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A01 TOG896530 SNP 72.8 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG03 Ah2n_TOG896530_2 SNP 18.52 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG896530 TOG 41,171,488 - 41,173,112 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG900787 SNP 49.3 soybean - GmJGI8x - Gm15 TOG900787 TOG 48,942,184 - 48,943,175 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG900787 TOG 22,863,002 - 22,863,720 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG900787 TOG 12,924,130 - 12,925,713 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG09 Cc_TOG900787_61 SNP 47.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG07 Ah2n_TOG900787_1 SNP 51.84 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG905268 SNP 46.9 soybean - GmJGI8x - Gm03 TOG905268 TOG 890,685 - 892,533 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG905268 TOG 6,948,794 - 6,951,801 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG899617 SNP 43.7 cowpea - VuCookUCDavis2009 - VuLG04 4_236_TOG899617_1_1109 SNP 49.89 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG15 Ah2n_TOG899617_1 SNP 32.94 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A10 SNP107 SNP 8.889 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A10 TOG899617 SNP 78.9 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr6 TOG899617 TOG 20,235,945 - 20,243,838 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr8 TOG899617 TOG 14,072,456 - 14,091,481 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG899617 TOG 8,474,846 - 8,492,783 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG899617 TOG 37,702,547 - 37,716,076 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG894153 SNP 43.7 lotus - LjKazusa200905 - LjChr3 TOG894153 TOG 8,567,669 - 8,574,341 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm13 TOG894153 TOG 36,462,821 - 36,469,929 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG894539 SNP 43.7 soybean - GmJGI8x - Gm13 TOG894539 TOG 36,462,821 - 36,469,929 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG894539 TOG 8,567,669 - 8,574,341 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 3_207_TOG894539_1_1242 SNP 49.89 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG901894 SNP 42.9 barrel medic - Mt3.0 - MtChr2 TOG901894 TOG 809,873 - 813,841 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm15 TOG901894 TOG 3,659,524 - 3,660,950 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG11 Cc_TOG901894_417 SNP 99.3 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A03 TOG901894 SNP 33.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP137 SNP 39.876 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG901894_2 SNP 29.4 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 4_133_TOG901894_2_155 SNP 49.89 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG900220 SNP 42.9 pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG900220_467 SNP 61.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG900220 TOG 24,333,193 - 24,337,969 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG900220_107 SNP 62.5 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A10 SNP121 SNP 50.421 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG900075 SNP 42.1 chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG900075 SNP 60 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG900075 TOG 25,223,936 - 25,230,526 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG900075 TOG 45,340,279 - 45,349,577 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG900075_331 SNP 59.9 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG902901 SNP 42.1 soybean - GmJGI8x - Gm12 TOG902901 TOG 10,244,489 - 10,247,887 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG902901 TOG 10,645,484 - 10,649,446 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm06 TOG902901 TOG 47,900,558 - 47,905,663 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG902901_2 SNP 43.87 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG902901 SNP 34.3 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG917669 SNP 42.1 soybean - GmJGI8x - Gm12 TOG917669 TOG 13,389,815 - 13,391,454 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 3_097_TOG917669_1_610 SNP 47.58 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG917669 TOG 24,589,530 - 24,591,504 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG894018 SNP 42.1 cowpea - VuCookUCDavis2009 - VuLG04 3_217_TOG894018_1_325 SNP 44.28 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG894018 TOG 11,571,375 - 36,619,895 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 3_018_TOG894018_1_250 SNP 44.28 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG894018 TOG 68,599,952 - 68,701,631 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG902140 SNP 42.1 soybean - GmJGI8x - Gm12 TOG902140 TOG 11,571,375 - 11,589,917 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG08 Ah2n_TOG902140_2 SNP 0.68 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG898533 SNP 42.1 soybean - GmJGI8x - Gm12 TOG898533 TOG 7,596,645 - 7,598,206 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG898533 SNP 32.7 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 4_125_TOG898533_1_351 SNP 32.3 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG906835 SNP 42.1 soybean - GmJGI8x - Gm06 TOG906835 TOG 46,173,827 - 46,174,813 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG906835 TOG 24,763,443 - 24,764,318 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG907934 SNP 42.1 soybean - GmJGI8x - Gm12 TOG907934 TOG 11,571,375 - 11,589,917 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG907934 TOG 68,603,251 - 68,607,047 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG907934_285 SNP 43.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG08 Ah2n_TOG907934_2 SNP 0.68 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 3_284_TOG907934_2_593 SNP 44.28 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 3_060_TOG907934_2_148 SNP 44.28 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG907934_628 SNP 52.8 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG907934 SNP 60.4 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG961354 SNP 42.1 soybean - GmJGI8x - Gm06 TOG961354 TOG 9,388,896 - 9,414,558 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG961366 SNP 42.1 soybean - GmJGI8x - Gm19 TOG961366 TOG 5,146,296 - 5,148,595 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr2 TOG961366 TOG 29,030,929 - 29,031,741 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG894098 SNP 42.1 soybean - GmJGI8x - Gm12 TOG894098 TOG 7,072,536 - 7,080,200 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG894098 TOG 33,260,143 - 33,264,538 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG894098 SNP 16.7 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG02 Ah2n_TOG894098_2 SNP 141.05 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG924126 SNP 42.1 soybean - GmJGI8x - Gm08 TOG924126 TOG 13,016,752 - 13,018,677 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG894314 SNP 39.7 lotus - LjKazusa200905 - LjChr3 TOG894314 TOG 75,245,698 - 75,248,870 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 4_376_TOG894314_1_1271 SNP 27.36 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr4 Ca_TOG894314 SNP 30.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894314 TOG 16,999,262 - 17,002,550 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm12 TOG894314 TOG 6,058,543 - 6,062,029 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG894314_126 SNP 22.3 (cM) Automated name-based, Automated name-based View Maps
cowpea - VuCookUCDavis2009 - VuLG04 4_245_TOG894314_1_1026 SNP 27.36 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG894314_563 SNP 22.3 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG899744 SNP 38.1 soybean - GmJGI8x - Gm12 TOG899744 TOG 5,806,082 - 5,808,673 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG19 Ah2n_TOG899744_1 SNP 7.6 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr3 TOG899744 TOG 28,949,664 - 28,950,813 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A08 SNP115 SNP 59.952 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A08 TOG899744 SNP 88.6 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG899744_464 SNP 19.7 (cM) Automated name-based, Automated name-based View Maps
Pv_TOG919767 SNP 38.1 pigeonpea - CcCookUCDavis2009 - CcLG05 Cc_TOG919767_147 SNP 21 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG919767 TOG 17,275,016 - 17,277,788 (cM) Automated name-based, Automated name-based View Maps