LIS - Legume Information System | CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial  


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set cowpea-VuCookUCDavis2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps VuLG08
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
automatic
blastn
e-PCR
tblastx
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: genetic [ View Map Type Info ]
Map Set Name: cowpea - VuCookUCDavis2009 [ View Map Set Info ]
Map Name: VuLG08
Map Start: 0 cM
Map Stop: 84.09 cM
Features by Type:
54 SNP
54 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 54.       of 3 | Next
cowpea - VuCookUCDavis2009 - VuLG08
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
3_045_TOG894712_1_164 SNP 0 peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP15 SNP 138.353 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894712 TOG 34,454,442 - 34,456,540 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG03 Cc_TOG894712_948 SNP 13.4 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG894712 SNP 91 (cM) Automated name-based, Automated name-based View Maps
3_108_TOG894712_1_315 SNP 0 peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP15 SNP 138.353 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG894712 TOG 34,454,442 - 34,456,540 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG03 Cc_TOG894712_948 SNP 13.4 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG03 Pv_TOG894712 SNP 91 (cM) Automated name-based, Automated name-based View Maps
3_260_TOG895545_1_309 SNP 0 lotus - LjKazusa200905 - LjChr0 TOG895545 TOG 18,634,224 - 18,637,075 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG895545_510 SNP 0 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG12 Ah2n_TOG895545_1 SNP 27.32 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG895545 SNP 57.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG895545 TOG 43,941,944 - 43,944,913 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG895545 SNP 0 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG895545_184 SNP 0 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG895545 TOG 26,482,881 - 26,484,614 (cM) Automated name-based, Automated name-based View Maps
3_210_TOG899130_2_246 SNP 1.64 common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG899130 SNP 4.3 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG899130 SNP 59.1 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG899130 TOG 25,827,125 - 25,828,066 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr4 TOG899130 TOG 36,927,455 - 36,930,305 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG899130 TOG 38,175,080 - 38,175,990 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr4 TOG899130 TOG 51,963,091 - 51,967,190 (cM) Automated name-based, Automated name-based View Maps
3_216_TOG898267_1_211 SNP 2.94 common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG898267 SNP 4.3 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm08 TOG898267 TOG 8,087,486 - 8,089,540 (cM) Automated name-based, Automated name-based View Maps
3_360_TOG919160_2_56 SNP 3.59 soybean - GmJGI8x - Gm18 TOG919160 TOG 437,430 - 438,813 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG12 Ah2n_TOG919160_2 SNP 32.14 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG919160 TOG 25,704,662 - 25,707,755 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG919160_306 SNP 1.3 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG919160_375 SNP 1.3 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG919160 SNP 4.3 (cM) Automated name-based, Automated name-based View Maps
3_142_TOG900146_2_267 SNP 4.57 peanut - AA_A.duranensis_x_A.stenosperma_e - LG06 Ah2n_TOG900146_2 SNP 155.56 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm05 TOG900146 TOG 33,547,482 - 33,548,374 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_d - A03 TOG900146 SNP 115.8 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG900146 SNP 11 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A03 SNP120 SNP 132.55 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG900146 TOG 38,602,413 - 38,603,488 (cM) Automated name-based, Automated name-based View Maps
3_327_TOG946994_2_756 SNP 7.88 common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG946994 SNP 14.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG946994 TOG 37,493,448 - 37,496,982 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A10 SNP234 SNP 59.599 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG946994_565 SNP 10.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG946994 TOG 1,515,230 - 1,571,470 (cM) Automated name-based, Automated name-based View Maps
3_033_TOG918228_2_489 SNP 8.86 soybean - GmJGI8x - Gm18 TOG918228 TOG 1,838,599 - 1,840,382 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG918228 TOG 37,238,992 - 37,240,729 (cM) Automated name-based, Automated name-based View Maps
3_011_TOG927739_1_281 SNP 9.18 chickpea - CaCookUCDavis2009 - CaChr3 Ca_TOG927739 SNP 34.9 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG927739 SNP 18 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG927739_956 SNP 57.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm14 TOG927739 TOG 4,566,232 - 4,567,511 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG927739 TOG 22,526,927 - 22,528,835 (cM) Automated name-based, Automated name-based View Maps
3_009_TOG897762_1_214 SNP 9.83 soybean - GmJGI8x - Gm11 TOG897762 TOG 36,758,857 - 36,762,596 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG897762 TOG 22,113,442 - 22,118,625 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG16 Ah2n_TOG897762_1 SNP 14.71 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG897762 SNP 18.8 (cM) Automated name-based, Automated name-based View Maps
3_264_TOG894818_1_182 SNP 10.16 pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG894818_953 SNP 16.6 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG894818 SNP 18.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894818 TOG 36,626,557 - 36,629,826 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894818 TOG 22,036,665 - 22,041,849 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG894818_162 SNP 16.6 (cM) Automated name-based, Automated name-based View Maps
3_066_TOG894818_1_436 SNP 10.48 pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG894818_953 SNP 16.6 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG894818 SNP 18.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm11 TOG894818 TOG 36,626,557 - 36,629,826 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr3 TOG894818 TOG 22,036,665 - 22,041,849 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG894818_162 SNP 16.6 (cM) Automated name-based, Automated name-based View Maps
3_229_TOG909004_1_560 SNP 11.46 barrel medic - Mt3.0 - MtChr5 TOG909004 TOG 33,613,321 - 33,617,630 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG08 Cc_TOG909004_471 SNP 18.5 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm18 TOG909004 TOG 3,105,355 - 3,107,462 (cM) Automated name-based, Automated name-based View Maps
3_302_TOG901928_2_404 SNP 13.43 common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG901928 SNP 29.8 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG901928 SNP 68.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG901928 TOG 45,207,022 - 45,207,781 (cM) Automated name-based, Automated name-based View Maps
3_225_TOG963076_2_159 SNP 14.75 pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG963076_425 SNP 98.4 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG963076 TOG 47,982,058 - 47,983,122 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG963076 TOG 32,654,886 - 32,656,731 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG963076 SNP 27.3 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG01 Cc_TOG963076_335 SNP 98.4 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG09 Ah2n_TOG963076_2 SNP 21.45 (cM) Automated name-based, Automated name-based View Maps
3_034_TOG896981_1_266 SNP 16.4 common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG896981 SNP 36.4 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896981_70 SNP 162.7 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG896981 TOG 35,812,948 - 35,815,604 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG896981 SNP 36.3 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896981_524 SNP 162.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG896981 TOG 36,794,485 - 36,797,192 (cM) Automated name-based, Automated name-based View Maps
3_238_TOG896981_1_109 SNP 16.4 common bean - PvCookUCDavis2009 - PvLG10 Pv_TOG896981 SNP 36.4 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896981_70 SNP 162.7 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr5 TOG896981 TOG 35,812,948 - 35,815,604 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr1 Ca_TOG896981 SNP 36.3 (cM) Automated name-based, Automated name-based View Maps
pigeonpea - CcCookUCDavis2009 - CcLG10 Cc_TOG896981_524 SNP 162.7 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm10 TOG896981 TOG 36,794,485 - 36,797,192 (cM) Automated name-based, Automated name-based View Maps
3_286_TOG900375_1_657 SNP 17.05 barrel medic - Mt3.0 - MtChr7 TOG900375 TOG 31,077,460 - 31,082,570 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG900375 SNP 33.8 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG900375 TOG 44,383,365 - 44,386,860 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG900375 TOG 46,904,114 - 46,907,615 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG900375 TOG 17,905,511 - 17,909,092 (cM) Automated name-based, Automated name-based View Maps
3_198_TOG896448_2_163 SNP 18.37 peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP51 SNP 71.117 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr0 TOG896448 TOG 5,730,062 - 5,734,009 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG896448 TOG 44,077,336 - 44,080,634 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG896448 SNP 65.3 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG896448 TOG 30,739,457 - 30,740,049 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG896448 SNP 34.6 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG896448 TOG 46,548,017 - 46,551,889 (cM) Automated name-based, Automated name-based View Maps
3_274_TOG903904_1_258 SNP 18.7 peanut - AA_A.duranensis_x_A.stenosperma_e - LG09 Ah2n_TOG903904_1 SNP 11.25 (cM) Automated name-based, Automated name-based View Maps
common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG903904 SNP 36.2 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm03 TOG903904 TOG 43,850,011 - 43,851,354 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP151 SNP 70.347 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG903904 SNP 64.5 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr7 TOG903904 TOG 30,452,565 - 30,453,985 (cM) Automated name-based, Automated name-based View Maps
3_243_TOG904180_1_386 SNP 21.35 lotus - LjKazusa200905 - LjChr5 TOG904180 TOG 17,015,848 - 17,017,094 (cM) Automated name-based, Automated name-based View Maps
barrel medic - Mt3.0 - MtChr1 TOG904180 TOG 33,135,348 - 33,137,576 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm02 TOG904180 TOG 39,934,940 - 39,936,016 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.duranensis_a - A10 SNP158 SNP 34.129 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG904180 TOG 45,648,735 - 45,650,228 (cM) Automated name-based, Automated name-based View Maps
4_282_TOG901858_2_584 SNP 27.47 peanut - AA_A.duranensis_x_A.duranensis_a - A06 SNP136 SNP 59.055 (cM) Automated name-based, Automated name-based View Maps
chickpea - CaCookUCDavis2009 - CaChr7 Ca_TOG901858 SNP 53.4 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG901858 TOG 75,554,683 - 75,558,932 (cM) Automated name-based, Automated name-based View Maps
peanut - AA_A.duranensis_x_A.stenosperma_e - LG01 Ah2n_TOG901858_2 SNP 6.26 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG901858 TOG 44,131,174 - 44,136,304 (cM) Automated name-based, Automated name-based View Maps
4_023_TOG903032_2_246 SNP 28.13 common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG903032 SNP 47 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG903032 TOG 43,952,605 - 43,956,348 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG903032 TOG 75,112,085 - 75,120,398 (cM) Automated name-based, Automated name-based View Maps
4_123_TOG903032_2_455 SNP 28.13 common bean - PvCookUCDavis2009 - PvLG08 Pv_TOG903032 SNP 47 (cM) Automated name-based, Automated name-based View Maps
soybean - GmJGI8x - Gm19 TOG903032 TOG 43,952,605 - 43,956,348 (cM) Automated name-based, Automated name-based View Maps
lotus - LjKazusa200905 - LjChr1 TOG903032 TOG 75,112,085 - 75,120,398 (cM) Automated name-based, Automated name-based View Maps